Index

A

aggr_ses_reports (petprep.config.execution attribute)

anat_only (petprep.config.workflow attribute) anatref (petprep.config.workflow attribute)

B

bids_database_dir (petprep.config.execution attribute) bids_description_hash (petprep.config.execution attribute)

bids_dir (petprep.config.execution attribute) bids_filters (petprep.config.execution attribute) boilerplate_only (petprep.config.execution attribute)

C

cifti_output (petprep.config.workflow attribute) cli (petprep.config.loggers attribute) combine_runs (petprep.config.execution attribute)

country_code (petprep.config.execution attribute) cpu_count (petprep.config.environment attribute) crashfile_format (petprep.config.nipype attribute)

D

dataset_links (petprep.config.execution attribute) debug (petprep.config.execution attribute)

default (petprep.config.loggers attribute) derivatives (petprep.config.execution attribute) dumps() (in module petprep.config)

E

environment (class in petprep.config) exec_docker_version (petprep.config.environment attribute)

exec_env (petprep.config.environment attribute) execution (class in petprep.config)

F

force (petprep.config.workflow attribute) free_mem (petprep.config.environment attribute) from_dict() (in module petprep.config)

fs_license_file (petprep.config.execution attribute) fs_no_resume (petprep.config.workflow attribute) fs_subjects_dir (petprep.config.execution attribute)

G

get() (in module petprep.config)

get_linked_libs (petprep.config.nipype attribute) get_plugin() (petprep.config.nipype class method)

H

hires (petprep.config.workflow attribute) hmc_fix_frame (petprep.config.workflow attribute) hmc_fwhm (petprep.config.workflow attribute)

hmc_init_frame (petprep.config.workflow attribute) hmc_off (petprep.config.workflow attribute) hmc_start_time (petprep.config.workflow attribute)

I

ignore (petprep.config.workflow attribute) init() (petprep.config.execution class method) (petprep.config.loggers class method) (petprep.config.nipype class method) init_pet_confs_wf() (in module petprep.workflows.pet.confounds) init_pet_fit_wf() (in module petprep.workflows.pet.base) init_pet_fsLR_resampling_wf() (in module petprep.workflows.pet.resampling) init_pet_grayords_wf() (in module petprep.workflows.pet.resampling)

init_pet_hmc_wf() (in module petprep.workflows.pet.hmc) init_pet_native_wf() (in module petprep.workflows.pet.base) init_pet_reg_wf() (in module petprep.workflows.pet.registration) init_pet_surf_wf() (in module petprep.workflows.pet.resampling) init_pet_wf() (in module petprep.workflows.pet.base) init_petprep_wf() (in module petprep.workflows.base) init_single_subject_wf() (in module petprep.workflows.base) init_spaces() (in module petprep.config) interface (petprep.config.loggers attribute)

L

layout (petprep.config.execution attribute) level (petprep.config.workflow attribute) load() (in module petprep.config) log_dir (petprep.config.execution attribute)

log_level (petprep.config.execution attribute) loggers (class in petprep.config) longitudinal (petprep.config.workflow attribute) low_mem (petprep.config.execution attribute)

M

md_only_boilerplate (petprep.config.execution attribute) medial_surface_nan (petprep.config.workflow attribute) memory_gb (petprep.config.nipype attribute) module petprep.config petprep.interfaces.segmentation petprep.utils.segmentation petprep.workflows.base petprep.workflows.pet petprep.workflows.pet.base petprep.workflows.pet.confounds petprep.workflows.pet.fit petprep.workflows.pet.hmc petprep.workflows.pet.registration petprep.workflows.pet.resampling petprep.workflows.pet.segmentation

N

nipype (class in petprep.config) nipype_version (petprep.config.environment attribute)

notrack (petprep.config.execution attribute) nprocs (petprep.config.nipype attribute)

O

omp_nthreads (petprep.config.nipype attribute) output_dir (petprep.config.execution attribute) output_layout (petprep.config.execution attribute)

output_spaces (petprep.config.execution attribute) overcommit_limit (petprep.config.environment attribute) overcommit_policy (petprep.config.environment attribute)

P

participant_label (petprep.config.execution attribute) pet2anat_crop (petprep.config.workflow attribute) pet2anat_crop_fallback (petprep.config.workflow attribute) pet2anat_crop_fallback_threshold (petprep.config.workflow attribute) pet2anat_dof (petprep.config.workflow attribute) pet2anat_init (petprep.config.workflow attribute) pet2anat_method (petprep.config.workflow attribute) pet2anat_method_specified (petprep.config.workflow attribute) petprep.config module petprep.interfaces.segmentation module petprep.utils.segmentation module petprep.workflows.base module petprep.workflows.pet module petprep.workflows.pet.base module petprep.workflows.pet.confounds module

petprep.workflows.pet.fit module petprep.workflows.pet.hmc module petprep.workflows.pet.registration module petprep.workflows.pet.resampling module petprep.workflows.pet.segmentation module petprep_dir (petprep.config.execution attribute) petref (petprep.config.workflow attribute) petref_specified (petprep.config.workflow attribute) plugin (petprep.config.nipype attribute) plugin_args (petprep.config.nipype attribute) processing_groups (petprep.config.execution attribute) project_goodvoxels (petprep.config.workflow attribute) pvc_method (petprep.config.workflow attribute) pvc_psf (petprep.config.workflow attribute) pvc_tool (petprep.config.workflow attribute)

R

rec_label (petprep.config.execution attribute) ref_mask_index (petprep.config.workflow attribute) ref_mask_name (petprep.config.workflow attribute) regressors_all_comps (petprep.config.workflow attribute) regressors_dvars_th (petprep.config.workflow attribute) regressors_fd_th (petprep.config.workflow attribute)

remove_unnecessary_outputs (petprep.config.nipype attribute) reports_only (petprep.config.execution attribute) resource_monitor (petprep.config.nipype attribute) run_label (petprep.config.execution attribute) run_msmsulc (petprep.config.workflow attribute) run_reconall (petprep.config.workflow attribute) run_uuid (petprep.config.execution attribute)

S

seg (petprep.config.workflow attribute) session_label (petprep.config.execution attribute) skull_strip_fixed_seed (petprep.config.workflow attribute) skull_strip_t1w (petprep.config.workflow attribute)

skull_strip_template (petprep.config.workflow attribute) sloppy (petprep.config.execution attribute) spaces (petprep.config.workflow attribute) stop_on_first_crash (petprep.config.nipype attribute) subject_anatomical_reference (petprep.config.workflow attribute)

T

task_id (petprep.config.execution attribute) templateflow_home (petprep.config.execution attribute) templateflow_version (petprep.config.environment attribute)

to_filename() (in module petprep.config) tracer_label (petprep.config.execution attribute) track_carbon (petprep.config.execution attribute)

U

utils (petprep.config.loggers attribute)

V

version (petprep.config.environment attribute)

W

work_dir (petprep.config.execution attribute) workflow (class in petprep.config) (petprep.config.loggers attribute)

write_graph (petprep.config.execution attribute)